Toni Gabaldón

4 Questions 21 Answers 0 Followers

Questions related from Toni Gabaldón

Can anyone recommend a method for Mining Gene Expression Omnibus (GEO) for the expression of 1 gene?

Hi, I am interested in the expression of a single gene across the +400 expression datasets that are available for that species in GEO .http://www.ncbi.nlm.nih.gov/geo/ Does anyone know of a...

10 October 2014 438 6 View

Does anyone know a tool for aligning RNA sequences using a known structure?

I am interested in aligning two homologous (but distant) RNA molecules for which the 2D structure of one is known from a crystal structure. I want to use a program that would make structure-based...

02 February 2014 5,978 1 View

What RNA 2D structure viewer would you recommend?

I am interested in viewing RNA secondary structures, and I am looking for an application which I could install locally in my computer (Linux). Input should be .ct or other standard formats. It...

03 March 2013 5,206 14 View

Partitioning strategy and branch lenght in RAxML

When using RAxML over a set of many concatenated alignments for which we know the preferred model, we usually create a partition per model that includes all the genes following that model. I have...

02 February 2013 8,299 13 View