Tomasz Molcan

3 Questions 7 Answers 0 Followers

Questions related from Tomasz Molcan

How can one transfer all ligands from templates to final homology model?

I have 3 X-ray structures with co-crystallized ligand in active site. How should I actively copy all ligand in this same position from all temple to the final homology models? I perform homology...

03 February 2015 6,811 4 View

Does anyone have experience with modeling closed state proteins from open state?

Hello, I'm modeling protein structure by Modeller. My template has 66% identity and 99% coverage, however it is in the open state without ligand. For the further analysis closed state of the...

01 October 2014 2,386 7 View

Which of the CHARMM force field versions is better for protein structural biology studies?

Charmm27 or Charmm36?

21 May 2014 8,235 2 View