Tirta Setiawan

2 Questions 4 Answers 0 Followers

Questions related from Tirta Setiawan

Can anyone help with the protocol and necessary steps that I should take to run molecular dynamics using gromacs for Protein-DNA bound complex?

my complex consist of double strand DNA break, after pdb2gmx command and choose Amber03 force field , i got some following error like this: "Atom P in residue DA 1 was not found in rtp entry DA5...

06 June 2015 6,306 5 View

Any suggestions on Gromacs error at running NVT?

I want to run an MD simulation for Protein-ligand complex and following Gromacs tutorial of Justin Lemkul Department of Biochemistry, Virginia Tech. I have successfully simulation until the and of...

06 June 2015 4,100 3 View