Timothée Bastide

3 Questions 2 Answers 0 Followers

Questions related from Timothée Bastide

How can I search the best evolution model with gap coding, using PartitionFinder?

Hi! I need to know the best evolution models for each partition of a DNA alignment. My nexus file contains an indel coding. PartitionFinder needs a PHYLIP file to run an analysis. However, when I...

24 May 2022 6,452 3 View

Is it possible to set a model of indel coding in IQtree?

Hi! I want make a phylogeny in maximum likelihood with gap coding. I use to use IQtree to make a ML phylogenetic inference, but I've never tried with a gap coding model. I know that MrBayes can...

23 May 2022 9,077 1 View

PAUP : heuristic search for a supertree inference (with a MRP) doesn't stop. Can you help me?

Hi! I'm working on a phylogenetic inference (molecular) with 205 taxa and 5350 characters (7 different genes). I've ever made a phylogeny thanks to a supermatrix. There were some polytomies. The...

12 May 2022 5,057 1 View