Thiago Benazzi Maia

6 Questions 37 Answers 0 Followers

Questions related from Thiago Benazzi Maia

What does 0 p-value means on a Illumina HumanMethylation450 BeadChip file?

I'm very new at epigenetics and I came across some processed files from GEO database specially this one: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE64491 More specific to the file...

28 July 2022 8,862 3 View

Which force equation should I use for bonded atoms?

Hello For learning purposes, I'm working on a simulation where the user can input any force equation and the application will apply that equation to all bodies on the...

19 June 2017 7,870 3 View

Where is the protein exit tunnel on ribosome PDB 4V6X?

Hello I'm trying to develop a protein folding prediction software. I was studying this paper "Structures of the human and Drosophila 80S ribosome" about the PDB 4V6X. I'm wondering if someone...

09 June 2015 500 3 View

What is the path from a x-ray image to a pdb file in x-ray crystallography?

Hello, I'm a beginner on x-ray crystallography. I'm trying to understand what is the software needed to start from an image till the pdb file. I'm able to download the images from here...

08 August 2014 5,908 6 View

Why is ASP on PDB 3NIR with pH 7 not deprotonated?

If I open with Jmol and select model A or C, both have hydrogen bonding with the oxygen. Should this hydrogen being there? From the 3NIR document this is the method used 60% ethanol in water, pH...

12 July 2014 5,599 4 View

If PDB 2RBK has resolution 1A why does it have atoms with positions smaller the 1? Does this mean that the positions are predicted by software?

Probably this is a basic question for those who work with X-ray crystallography but I didn't get it. If my computer screen has a resolution of 800px the minimal position is 1px. But on the PDB...

28 April 2014 1,613 2 View