Syeda Fatima Roshan Haneef

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Questions related from Syeda Fatima Roshan Haneef

How to correct for identical correlation errors in PLINK?

I am running a gwas on my data- I have done all the QC analysis according to the nature protocols. however , after running a GWAS, I noticed that all the SNPs had identical correlation to the...

08 March 2025 115 0 View

Can I use LiftOver Picard for converting SNPs from one genomic build to another? If yes, how? If no, then what is the best alternate?

I have a few sample vcfs which are not in a very good quality. They are 23andme files from OpenSNP in the following format: rsID, chromosome no, position, genotype I have tried remapping them...

29 October 2024 8,400 2 View