Sunitha P.

6 Questions 9 Answers 0 Followers

Questions related from Sunitha P.

Is there a way to remove the bootstrap values from the tree file?

Can anyone suggest a program/ software which helps to remove the bootstrap values from the phylogenetic tree file?

04 April 2015 5,613 12 View

How can I measure gene regulation by miRNA and transcription factor?

How to find out the regulation of a gene (up/down) by the action of a miRNA & TF? Or if I put it across in the other way, given a TF/ miRNA, how to find whether the gene on which it acts gets...

03 March 2015 7,066 5 View

Anyone who can help me with the divergence time estimation using BEAST?

Hi, I have tried BEAST for calculating the evolutionary divergence time for my study, consisting of ~ 80 taxa & having a length of ~80,000 bps per taxa. After the run was completed, the BEAST...

03 March 2015 9,873 6 View

Does anyone have experience with making substitution models for phylogenetic tree construction?

I have to construct a phylogentic tree using nucleotide sequence data. I have used jModeltest for model testing and the best model which fits my data has been found to be the TVM+I+G, TIM3+I+G....

09 September 2014 8,314 8 View

Any tool which gives the names of TFs controlling a microRNA or vice versa?

Is there any bioinformatics software/ resource which gives the names of Transcription factors controlling a microRNA or vice versa?

02 February 2014 6,056 7 View

Given a gene or its mRNA, is there any tool to find the microRNAs regulating it?

There are numerous bioinformatics tools which predict the targets of a given miRNA. Is there any tool/ software to find the microRNAs regulating a given set of known genes/ mRNAs?

12 December 2013 1,245 17 View