3 Questions 2 Answers 0 Followers
Questions related from Sultan Khan
hello I have done a 50ns MD simulation production run on three different protein-peptide complexes. unfortunately, I am getting quite a high RMSD in all of them. I tried many things but couldn't...
25 July 2023 1,575 2 View
I've done a 50 ns protein-ligand MD simulation. Getting stable RMSD for the first 20 ns, but it increases afterwards, and at some point frame, it's getting very high. My question is, is my md...
20 June 2023 1,142 3 View
I've done 2ns protein-ligand MD simulation in two ways 1. first I used general MD simulation, generating every single file by commands as suggested in gromacs tutorial. As an output, I've got 200...
05 June 2023 9,397 4 View
