Stacy Hung

2 Questions 6 Answers 0 Followers

Questions related from Stacy Hung

How to interpret codeml output from PAML (Phylogenetic Analysis by Maximum Likelihood)?

I simply want one omega value (dn/ds) for a multiple sequence alignment. I am using CDS sequences that have been codon aligned and are from 19 different strains of the same species (so the...

30 May 2013 1,487 7 View

Calculating dN/dS from bwa assembly

I have taken Illumina reads and aligned them to a reference genome using BWA then obtained the corresponding BAM/SAM files. I have also called SNPs, which are in VCF format, and tried to use this...

03 April 2013 3,747 9 View