Shymaa Damfo

3 Questions 6 Answers 0 Followers

Questions related from Shymaa Damfo

How to calculate the RMSD between chains in the same PDB file?

Hi, I have a pdb file with 8 protein molecules (chain A, B, C...). So eight molecules in the asymmetric unit. I'm wondering how can I calculate the RMSD between these chains? Thanks, Shymaa

18 December 2020 5,070 4 View

Is it possible to have different amino acid in the protein crystal structure that doesn't match with its real sequence?

Hi, I had crystallised a protein and realised that some amino acids doesn't fit to the electron density in the electron density map. Is it possible to have different amino acid in the protein...

08 September 2020 7,284 7 View

Arrangement of monomers in crystal structure

Dear all, Can I have your opinion: I have crystal structure of viral protein and has 4 dimers. What would be the best way to identify whether the arrangement of protein in crystal structure is...

01 January 1970 1,739 6 View