Shivaksh Ahluwalia

3 Questions 5 Answers 0 Followers

Questions related from Shivaksh Ahluwalia

Which LncRNA transcript variant do I study?

The LncRNA I am interested in studying has many transcript variants, 14 as per ensembl. I want to study the effect of over-expression of this LncRNA. To do so I want to clone the LncRNA into a...

26 February 2018 1,650 5 View

How do we identify DEGs in tumour (disease) vs non-tumour (non-disease) samples?

In a dataset I am analysing, there is a single replicate of RNA seq (or microarray) data each for tumour tissue and adjacent non-tumour tissue. Such data is available for say 10 patients in the...

07 November 2017 8,747 6 View

How can one identify DEGs from the various files provided for RNA seq data on GEO?

I need to identify DEGs from RNA seq datasets provided in GEO. I have found the GEO2R tool to be quite useful, but it is not available for all datasets, for instance if the series matrix file is...

25 October 2017 4,237 5 View