Serhii Vakal

5 Questions 27 Answers 0 Followers

Questions related from Serhii Vakal

What is the best way to convert a list of molecular names to the structures?

Dear colleagues, I've got a list of molecules (just names) which I would like to convert into a library for virtual screening. So, I wonder what is the most convenient way to get the structures...

05 May 2018 1,581 23 View

How can I model a spatial structure of the protein with a specific secondary structure in some regions?

Dear coallegues, I have a protein X without experimentally-solved 3D structure, but with a lot of data on its' secondary structure organization (in other words, I know the conformation (secondary...

25 February 2016 7,241 2 View

How can I perform docking of two proteins, one of which is glycated?

I want to study the interaction of the enzyme with its substrate - glycated protein. I know that the enzyme specifically binds the sugar residue of the protein-substrate. I understand, how to...

21 October 2015 2,119 4 View

How can I measure the binding energy experimentally?

I have a wild-type enzyme 'Ewt' and few mutant forms of this enzyme ('Emut1-Emutn'), and I want to compare energy of binding (Gb) of a substrate 'S' to these enzymes. I know that binding energy...

05 October 2015 3,029 9 View

Can someone give advice on how to clear my confusion with IgE-binding sites prediction?

Dear colleagues, Currently I'm trying to predict probable IgE-binding regions in one of the allergenic proteins and reveal candidate residues for mutation in order to design a...

09 February 2015 532 1 View