Saugata Hazra

4 Questions 8 Answers 0 Followers

Questions related from Saugata Hazra

How we could calculate the range of phi and psi angle between a monopeptide.

For example, attached file is representing a .pdb file containing a peptide between two glycine. How we could measure the range of phi and psi angles here. Thanks in advance for your help and...

16 February 2016 6,926 4 View

How to model a protein with multiple domains and no template covering more than one domain?

I'm trying to model a protein which has multiple domains and templates available covering small parts of the sequence. It is a 4500 aa protein and to moderately covering the sequence it needs 7...

12 December 2013 9,182 19 View

Can someone recommend a good theoretical method by which two mutant variants could be differentiated?

Stability of protein mutants: I'm trying to design thermostable variants of a protein. Is it possible to theoretically differentiate them without doing simulation? What would be the parameters I...

22 July 2013 5,449 4 View

How to relate loop flexibility with enzyme catalysis?

I'm working with an enzyme where some of the loops are playing important roles in catalysis. How could I study the relation of loop flexibility with the re-activity (computationally)?

10 June 2013 9,999 5 View