Сашко Лихенко

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Questions related from Сашко Лихенко

How to get a list of all human morphogens?

Gene Ontology provides many genes annotated as taking part in various morphogenesis processes but I want to get a list of all morphogen coding genes specifically. Uniprot does not have...

20 January 2022 2,269 2 View

How to approach choosing lower log fold change margin when performing differential expression analysis on microarray data?

Generally in microarray differential expression analysis studies the lower bound for |logc| is chosen around 1 to make fold change 2 which sounds like a common sense. In other cases, when |logfc|...

13 October 2019 9,300 2 View

How to check if a tissue sample is mixed with blood based on transcriptome data?

I want to check if decidua tissue samples in dataset (from GEO database) GSE60438 are mixed with blood. I merged dataset GSE60438 with dataset GSE73685 consisting of multiple tissues including...

10 June 2019 3,981 2 View

Can I count distance between my sequence and the consensus one having only sequence logo?

In Maximum Entropy Modeling of Short Sequence Motifs with Applications to RNA Splicing Signals (link below) Gene Yao estimates the consensus sequences of 5' splice site. The author provides two...

08 June 2018 384 2 View