Sandipan Samaddar

4 Questions 9 Answers 0 Followers

Questions related from Sandipan Samaddar

How to find properties of a network plot?

Hi, I constructed a network with igraph showing the connections between bacterial groups in three different systems (suppose A, B and C). Each node represented an OTU/ASV and edge represented...

22 June 2020 7,760 1 View

Which the best choice of primer for targeting 16S of bacteria and archaea?

I am working on a project aimed to determine the influence of long-term fertilization on soil microbial communities. I am sampling both the rhizosphere and the bulk soil and hope to use the...

05 September 2019 4,155 4 View

Is there any tool to predict metagenomic functional content from marker gene of fungi (ITS)?

Hello, Greetings.I am aware of tools like Vikodak, PiCrust,Tax4Fun etc for prediction of functional potential from 16S rRNA genes of bacterial communities.In my current study, I also checked for...

03 May 2018 1,790 7 View

I have functional gene(amoA) raw sequencing data.What should be the best way to proceed further?

Hello, How should I proceed with my raw functional gene sequencing data obtained from Roche 454.Which pipeline should I use to process the sequences?Which database should I use? Any help on this...

17 January 2017 613 3 View