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Questions related from Ryosaku Ota
Thank you for taking the time to read my question. I have two distinct poses of a protein (poseA.pdb and poseB.pdb) and would like to know the transition state structure (saddle point) between...
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Thank you for taking the time to read my question. I am interested in computational approaches to studying the binding affinity between proteins and metal ions. Methods such as Molecular Dynamics...
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Thank you for reading. I'd like to create contour map generated with the CoMFA. If you know how, please tell me the reference paper or books. And is it possible to create it when using other...
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I have mathematical problem. I want to know the constraint condition that oscillation occurs (differential equation). For...
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I do not know how to do in the below case in Naive Bayes. I want to predict probability of each class by using continuous variables. In my case, class's name are A,B,C,D and prior probability is...
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I have many pdb files (amino sequences are alike). And I would like to use these data for machine learning. In my problem, amino sequences have same length, but the number of atoms is not...
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I want to make some mutant protein in silico and get the structural data such as PDB by using usual protein structure. Do you know the method(software or codes)? In addition, I want to know how...
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