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Questions related from Rowan Schley
Has anyone done tests of selection (Dn/Ds, MK etc) on phylogenomic data (specifically, target capture) for many species? The major problem is removing stop codons, since the locus alignments are...
22 May 2023 995 2 View
In the past I have used PhyDesign (http://phydesign.townsend.yale.edu/) to profile phylogenetic informativeness on smaller phylogenomic datasets, but I was wondering if any new iterations/similar...
14 September 2022 7,935 0 View
I have tried calculating and plotting these with HiEst, Introgress etc but with no luck. Is there a more modern method to do this, using ddRADseq data?
20 May 2020 513 3 View
What is the best way to date a phylogenomic tree using fossil calibration? It is more or less straightforward with a few Sanger loci using programs like BEAST, but it becomes intractable with...
27 February 2020 4,562 8 View
Hi there, I have ddRADseq data, with RAD-loci assembled de-novo using the STACKS pipeline for two species and their hybrids. As such, I was wondering how I could estimate Fst for each of those...
31 October 2018 5,150 4 View
Does anyone know how to plot the result outputs (alpha, beta and quantiles) from Bayesian estimation of genomic clines (bgc)? The manual recommends to do so in R, but I am unsure of how to do the...
06 August 2018 4,730 7 View