Why the detected protein count reduced when i perfomed proteomics of 30 .raw files and then 100 .raw (prev. 30 files included) using maxquant?

Recently i started a proteomics of blood plasma (100 ms/ms files .raw) against fungal fasta (from uniprot) using MaxQuant in linux. I started with 6 .raw then 30 and finally all 100 files. In 6...

03 January 2024 3,143 5 View