Riya Vishwakarma

3 Questions 2 Answers 0 Followers

Questions related from Riya Vishwakarma

While doing GROMACS we have to solvate in a box. how to decide whether dodecahedron or cubic box is needed?

Hello everyone, In my previous molecular dynamics simulations using GROMACS, I used a dodecahedral box for the PDE5 (phosphodiesterase) protein. For a new system involving the FimH adhesion...

11 April 2025 4,664 0 View

How do you determine whether a phytochemical is acting as an inducer or inhibitor of Quorum sensing genes through molecualr docking studies?

Also, explain the rationale behind choosing standard inhibitors against QSL-Ahl interactions

09 November 2024 3,905 0 View

Do you know how PDB ids are assigned?

Is it like the ids that start with 8 such as 8B4A is a recently deposited one like in the year 2024 and 3RZE is previously deposited like in 2009 or something

01 January 1970 9,502 2 View