Ramiro Barrantes

2 Questions 2 Answers 0 Followers

Questions related from Ramiro Barrantes

When inferring deep branches of an ancient protein phylogeny, is analyzing thousands of sequences better than a more sophisticated analysis with less?

I work on an ancient protein family that exists in both eukaryotes and prokaryotes and my interest is in elucidating its deeper branches. When I pull down the data from NCBI I get about 6000...

21 October 2015 4,964 5 View

How can I reduce 15000+ refseq sequences while making a phylogeny of a protein superfamily?

I am revisiting a phylogeny I did years ago but now refseq in genbank has about 15000+ relevant protein sequences!! I wanted to filter those out to a more manageable set and I am using t-coffee...

07 October 2015 6,206 3 View