Rahul Arvind Jamdade

4 Questions 32 Answers 0 Followers

Questions related from Rahul Arvind Jamdade

How to generate Synthetic DNA barcode dataset?

Help appreciated!! We are having Empirical data sets of plant barcodes (matK, ITS and rbcL), and want to compare analytical methodology used for Empirical data sets with the Synthetic data...

25 September 2019 7,558 7 View

How to simulate/generate DNA sequences with reference to the Singletone Species?

I am having many singleton Species (species representing only one DNA sequence). These singletons lack resolution potential as they are single, when applied machine learning classifiers singletons...

16 September 2019 6,720 3 View

Which are most preferred Alignment-free tools for matK and ITS2?

I have NCBI GenBank mined DNA sequences belonging to matK and ITS2 regions. I would appreciate if anyone suggests alignment free tools to calculate K-mer frequencies OR Genetic distances in order...

06 September 2019 5,566 4 View

DNA barcoding, querry regarding tree based (cluster) methods for species identification?

I am working on success rate of DNA barcoding in identification of species using distance and tree based methods. Regarding distance based method, I have used Adhoc and species identifier and...

14 July 2014 5,110 10 View