Prerna Yadav

5 Questions 2 Answers 0 Followers

Questions related from Prerna Yadav

What are the rquirements of metavelvet tool for using it to assemble whole metagenome sequences?

Hello all, I am using metavelvet tool to assemble whole metagenome sequence data. I have R1 and R2 files each having 21991149 sequences. The system I am using have 32 GB RAM, linux and 1TB SSD....

07 March 2025 7,123 1 View

Is Galaxy.org good to use for research for analyzing data and for publication?

Hello all, I wanted to know, can I use galaxy (USA, Europe or Australia) platform for analyzing the shotgun data, and can it be used for publication purpose as well? Thanks :)

07 August 2024 6,674 4 View

Is it possible to identify novel AMR genes from whole metagenome sequencing (shotgun approach)?

Hello, I want to know, is novel gene identification possible by whole metagenome sequencing dataset. When annotation of genes is done, we get various hits. Some of the predicted genes get...

03 April 2024 3,229 0 View

Doing functional analysis by GhostKOALA, can anyone help me how to upload and analyze its outcome?

I'm using GhostKOALA for functional analysis (as mentioned in many papers). The limit of amino acid sequences that can be uploaded is 500,000. But, I have more sequences, so I split the file and...

21 June 2023 7,870 0 View

How to calculate abundance of the genes from the whole metagenomic data?

How abundance calculation is done for the genes which are annotated by any reference database like MegaRes, contig file generated after de novo gene assembly is aligned to the database using...

28 March 2023 2,097 1 View