Pedro de los Reyes Rodríguez

5 Questions 6 Answers 0 Followers

Questions related from Pedro de los Reyes Rodríguez

How to change node-edge binding position in Cytoscape Desktop?

Dear colleagues, I am trying to plot a protein-protein interaction network in Cytoscape. My idea is to place the node representing the bait protein on one side of the figure, and on the other...

19 December 2023 9,127 2 View

Several questions about my ChIP experiment using IgG beads. Can anybody help me?

Hello! I am trying to do a ChIP experiment using the IgG sepharose beads from GE Healthcare. I work with a recombinant protein in Arabidopsis fused to TapTag (Calmodulin binding peptide,...

12 January 2018 3,249 2 View

Which is the best way for visualizing a big network in Cytoscape?

I'm using Cytoscape for visualizing my transcriptional network, but it is huge. Specifically, it has 15842 nodes and 49812 edges. I have tested the prefuse force directed layout, is there a...

16 March 2015 7,855 19 View

How can I convert RSEM gene IDs to gene names?

I have developed a RSEM analysis in order to get a differential expression matrix. I have obtained a matrix of a list of genes with this kind of ID: c48895_g2. I can't realised a enrichment of GO...

19 February 2015 4,356 6 View

What is your criteria for choosing the target genes in ChIP-seq?

What do you do when a peak overlaps a gene? Do you choose these gen as a target?

02 December 2014 8,110 3 View