Nitin Sharma

3 Questions 15 Answers 0 Followers

Questions related from Nitin Sharma

Can anyone help with Idecomp AMBER?

Idecomp Energy decomposition scheme to use: 1 - Per-residue decomp with 1-4 terms added to internal potential terms 2 - Per-residue decomp with 1-4 EEL added to EEL and 1-4 VDWadded to...

08 April 2014 1,661 0 View

Is an MD simulation for a tetramer equal to 4 simulations of a monomer?

I know that multiple MD simulations are good for statistics and increases the reliability of the results. I have a protein which is tetrameric in natural state. i would like to know whether I...

03 April 2014 5,365 4 View

Can anyone help with calculating the RMSD between docked poses and one present in crystal structure?

I have performed docking using autodcok vina resulting in more than 5000 poses. Now I need to calculate the RMSD of the docked poses with one present in crystal structure. Is there any web server...

03 April 2014 460 7 View