Nicola Palmieri

6 Questions 5 Answers 0 Followers

Questions related from Nicola Palmieri

Is there a tool to predict pathogenicity in human for E. coli a part from PathogenFinder?

We have sequenced different avian isolates of E. coli and would like to predict their pathogenic potential in humans from the genome sequence, is there any tool that can help for this task? I have...

28 February 2022 2,286 0 View

Is there a protocol to separate host cells from bacteria in infected tissue to perform dual metabolomics?

I plan to study the changes in metabolite content in chicken infected tissue with a single strain of Gallibacterium anatis and I would like to monitor in time the concentrations of the metabolites...

14 June 2021 8,094 3 View

Is there a tool or R package to analyze the processed output of calcium imaging data, namely the calcium signal for each component?

All the tools I found deal with the processing from the raw data to the calcium components, but I am interested in the post-processing.

14 January 2021 4,186 2 View

What is the best way to visualize Illumina short reads coverage overlaid on a multiple alignment of strains of the same species?

I would like to show the reads and the intraspecies variability for a large region.

01 September 2017 2,720 2 View

Is there a tool to visualize domains on a multiple alignment of protein sequences?

I need to study domain gains/losses in species of protists that are quite divergent from each other, I want to align proteins based on domains and visualize the domain pattern on the multiple...

25 April 2016 5,468 5 View

In a host-parasite system, how can I find parasite proteins that bind to the DNA of the host (especially to promoters) during the infection process?

Is there a next generation sequencing technique that I can apply? It would be nice if I can identify all the parasite proteins that bind at once and the DNA location of the host.

16 March 2016 7,651 3 View