Naima Thahsin

3 Questions 1 Answers 0 Followers

Questions related from Naima Thahsin

What could be the possible reason of a sudden fluctuation in a stable RMSD plot of a protein-protein simulation?

I have run MD simulation of a protein-protein docked complex for 50ns. The RMSD plot obtained from the simulation is attached here. The RMSD plot shows a stable trajectory for entire simulation,...

10 June 2024 7,848 1 View

Is there any software/web server to add carbohydrate chains to a modelled protein?

Previously I have used GlyProt to add carbohydrate chains with my modelled protein, but the server is not working now. Is there any alternative tool for modeling glycosylated protein?

02 June 2024 861 1 View

How to interpret ERRAT plot which shows some residues having 0 value?

I have modeled an analog of a protein using MODELLER version 9.18. After modeling, one of the two loops of the protein showed relatively high energy in the DOPE energy profile (Fig attached). So,...

12 January 2019 3,539 0 View