Mukhtar Ahmad Sofi

3 Questions 2 Answers 0 Followers

Questions related from Mukhtar Ahmad Sofi

How can i obtain secondary structures and solvent accessibility of more than one protein sequences at once in PSIPRED?

I have a protein sequences dataset of more than 3000 proteins in separate fasta files. I want to obtain solvent accessibility and secondary structures in PSIPRED tool. How can I obtain these...

06 June 2019 9,719 3 View

How to conduct 1-dimensional (1D) convolutional transformations of sequential features to 2-D using outer product ?

I want to conduct a series of 1-dimensional (1D) convolutional transformations of sequential features (sequence profile, predicted secondary structure and solvent accessibility) to 2-dimensional...

05 May 2019 9,010 1 View

How to combine pssm matrix with orthogonal coding of amino acids?

If i have PSSM matrix of protein sequences and I want to combine it with orthogonal coding. How will i do it? I mean what will be the ouput? 2D or 1D?

04 April 2019 8,243 0 View