Mukhtar Ahmad Sofi

3 Questions 2 Answers 0 Followers

Questions related from Mukhtar Ahmad Sofi

How can i obtain secondary structures and solvent accessibility of more than one protein sequences at once in PSIPRED?

I have a protein sequences dataset of more than 3000 proteins in separate fasta files. I want to obtain solvent accessibility and secondary structures in PSIPRED tool. How can I obtain these...

20 June 2019 9,054 3 View

Why do we need to give different input features instead of just sequences to a convolutional neural network for protein structure prediction?

CNN extract the useful input festures from the raw data on its own. Then why we need to choose input features by ourself like solvent accessibility, secodary structures, evolutionary information...

27 May 2019 1,569 3 View

How to combine pssm matrix with orthogonal coding of amino acids?

If i have PSSM matrix of protein sequences and I want to combine it with orthogonal coding. How will i do it? I mean what will be the ouput? 2D or 1D?

25 April 2019 3,844 0 View