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After loading molecule in VMD, the path Extensions > Analysis > Ramachandran plot gives us Ramachandran plot for whole protein. I need a plot of specific residues, how will I do that ??
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Dear All, I want to dock two proteins in HADDOCK for which I know the binding sites. But in the second protein viz. a kinase, ATP is attached. Upon HADDOCK run I get the following error...
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