Mrigaya Mehra

6 Questions 14 Answers 0 Followers

Questions related from Mrigaya Mehra

Are there any tools which can perform pathway enrichment analysis for bacteria like pseudomonas ?

I have RNA seq data for pseudomonas and other bacterial sps with different phenotypes and I want to identify the different pathways differentially regulated. But I am unable to find pathway...

04 April 2017 6,643 5 View

Differential gene expression analysis using DESEQ?

Hi, I am just starting working with DESeq. I have a question regarding the basic biological interpretation of DESeq based DE gene expression. There are two situations I have listed below and I...

02 February 2017 9,558 4 View

Can anyone suggest me a good tools for drawing publication quality images? I would appreciate if these tools are free and available for linux?

I wish to draw publication quality images like the biogenesis of miRNA and also want to show it inside a cell environment. But, I could not find a tool which would help me do so. Most of the tools...

02 February 2015 5,315 2 View

Are there any small ncRNA annotation tools which can provide annotation for small-RNA seq data without using reference genome?

This is important for the identification of novel small ncRNAs from newly sequenced genomes.

12 December 2013 5,732 7 View

Any tool for creating clusters and then performing their phylogenetic clustering?

I have a set of sequences from 4 different species. I want to create clusters of sequences which are highly similar and show this information via a phylogenetic tree. I do not want to merge the...

07 July 2013 7,877 5 View

Does anyone know of a network creation tool for genomic data apart from Cytoscape?

I want to generate a weighted network for a set of genes, I wish to now about a tool which I can call in a script so that I can generate a different network for every gene.

06 June 2013 7,268 7 View