Mohsen Yazdani

3 Questions 7 Answers 0 Followers

Questions related from Mohsen Yazdani

How can I use a Topology file generated by an ATB server?

I have docked the protein-ligand complex. In the process of molecular dynamics by gromacs I used GROMOS96 53a6 force field for my protein. In the next step for my ligand according to GROMACS...

05 May 2014 5,054 13 View

I have problems with the validation of my docking results.

My research is the virtual screening of some ligands as a new inhibitor of β-secretase (BACE1) so, I should to compare the best docking result with native crystal structure , We have two forms of...

07 July 2013 2,086 4 View

MD on DNA ?

Do you know any tutorial for MD on DNA-Ligand Complex? Can I use Gromacs for DNA ?

03 March 2013 9,102 0 View