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Questions related from Mohamed Belhocine
I am looking to use different machine learning approaches to build some regression models. if it will possible to use machine learning methods for regression purposes? I have small genetic and...
10 August 2021 1,271 4 View
How to convert a VCF file into a FASTA file given a reference sequence using the abundant variants with Python?
07 September 2020 9,254 4 View
How can I construct a phylogenetic tree based on the SNP's shared between strains? I have whole genome SNP calls different strains in a multi-sample vcf. (raw fastq also) Are there any tools that...
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I am somewhat new to RNAseq data and I have been using featureCounts from the subread package to summarize reads/fragments across genomic features (genes, transcripts). In particular I am...
05 October 2015 5,356 1 View
Hello, I have a RNA-seq count Data, with several conditions. and I'd like to do to a polytomous analysis to find the different clusters and their respective gene signatures. I find le package in R...
10 April 2015 5,888 3 View
I have Cuffdiff (--no-diff) output tables and I want to perform clustering : 1) better to use Count or FPKM ? 2) Are "standard" clustering algorithms appropriate for RNA-Seq data due to its...
30 March 2015 7,746 24 View
How can I get the inflection point using r ?
13 February 2015 3,949 4 View
Is there a tool for converting a variable step wig to a fixed step wig? Thank you in advance for your help
09 February 2015 7,722 4 View
Is there any specific statistical test to evaluate the statistical significance of the detected coding gene and/or long non coding gene in RNA-Seq Data?
28 September 2014 665 3 View
