10 Questions 13 Answers 0 Followers
Questions related from Mohamed Belhocine
I am looking to use different machine learning approaches to build some regression models. if it will possible to use machine learning methods for regression purposes? I have small genetic and...
10 August 2021 1,286 4 View
How to convert a VCF file into a FASTA file given a reference sequence using the abundant variants with Python?
07 September 2020 9,266 4 View
How can I construct a phylogenetic tree based on the SNP's shared between strains? I have whole genome SNP calls different strains in a multi-sample vcf. (raw fastq also) Are there any tools that...
07 September 2020 9,251 7 View
Hi!I have an affy Copy Number results generated by the CN4 algorithm in CNCHP file format. What is the best way to analyze this CNCHP file and extract the Log2Ratio?. I need the result in tab txt...
19 April 2016 5,257 2 View
I am somewhat new to RNAseq data and I have been using featureCounts from the subread package to summarize reads/fragments across genomic features (genes, transcripts). In particular I am...
05 October 2015 5,369 1 View
Hello, I have a RNA-seq count Data, with several conditions. and I'd like to do to a polytomous analysis to find the different clusters and their respective gene signatures. I find le package in R...
10 April 2015 5,901 3 View
I have Cuffdiff (--no-diff) output tables and I want to perform clustering : 1) better to use Count or FPKM ? 2) Are "standard" clustering algorithms appropriate for RNA-Seq data due to its...
30 March 2015 7,758 24 View
How can I get the inflection point using r ?
13 February 2015 3,962 4 View
Is there a tool for converting a variable step wig to a fixed step wig? Thank you in advance for your help
09 February 2015 7,734 4 View
Is there any specific statistical test to evaluate the statistical significance of the detected coding gene and/or long non coding gene in RNA-Seq Data?
28 September 2014 678 3 View
