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Questions related from Milos Pjanic
Here is an example. Lets say two SNPs are co-inherited 100% of the times, D' prime will always be 1, while r2 incorporates the information about allele frequencies and thus will be lower than 1 if...
12 December 2016 4,947 6 View
Has anyone done a trans-eQTL analysis using data from GTEX? Would it be feasible due to relatively lower sample numbers in GTEX compared to what is required for trans-eQTL data analysis? Thanks
03 March 2016 5,815 1 View
I came across RASQUAL http://www.ncbi.nlm.nih.gov/pubmed/26656845 and WASP http://www.ncbi.nlm.nih.gov/pubmed/26366987 Probably there are more. Is there a comparative analysis of various allele...
01 January 2016 4,418 0 View
I am trying to map reads from whole genomes, and considering whether to employ older BWA-aln or newer BWA-mem aligners. BWA-mem will supposedly map more reads than BWA-aln, sometimes this...
12 December 2015 2,418 4 View