Mi Nguyen-Tra Le

4 Questions 10 Answers 0 Followers

Questions related from Mi Nguyen-Tra Le

Is there any software that can automatically extract the protein sequence of a target gene from a large number of genome sequences?

I have the whole genome sequences (WGS) of 200 strains of the same species, and I want to compare the protein sequences of a specific gene among 200 strains. I would like to ask is there any...

06 September 2021 1,287 7 View

How can I analyze the coverage and identity between 2 plasmids?

I have the complete sequences of two plasmids (~200kbp each) and want to compare and calculate the coverage and % identity between them. Could anyone please tell me which tools or softwares can I...

30 July 2021 9,604 4 View

Is there any disinfectant resistance genes database?

Databases of antimicrobial resistance (AMR) genes have been well established, but I wonder is there any similar database of disinfectant resistance genes. Does anybody have any idea about this?

13 July 2021 3,599 3 View

What is the tools or softwares to make a phylogenetic tree based on core genome sequences?

I have the Illumina whole-genome sequences data (which included both chromosome and plasmids sequences) of over 100 strains of the same species. Could anyone please tell me how to make a...

13 July 2021 9,736 4 View