Md Symon Jahan Sajib

3 Questions 3 Answers 0 Followers

Questions related from Md Symon Jahan Sajib

Can antechamber relax a structure in a small amount?

antechamber -i sustiva_new.pdb -fi pdb -o sustiva.mol2 -fo mol2 -c bcc -s 2 I am running antechamber. can the the command make the mol2 file a bit relaxed from pdb file?

14 August 2014 3,566 3 View

I am getting error in Autodock 4, can anyone help?

I am trying to dock a ligand with protein. The ligand is big (4821 atoms) and my protein is missing some residues. While running docking, everything is going okay but at the last stage after...

27 June 2014 3,085 4 View

How to add parameter for new molecule When docking in Autodock 4?

I want to run docking in Autodock 4. What if my pdb file of protein have some new atom for which the parameter is not included? How & where can I add the parameter on my own for that atom? I am...

26 June 2014 4,207 4 View