Md. Sahadot Hossen

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Questions related from Md. Sahadot Hossen

PatchDock: you have uploaded an empty file, how to deal with it?

PatchDock online server for protein-peptide showed in result section: You have uploaded an empty file. The file is not empty inside, all the documents contains are PDB structure. How to solve this...

05 October 2022 3,429 3 View

Should I use both chains A and B ( Homodimer, homology modeled) while performing Molecular Dynamics Simulation utilizing Gromacs?

We have been working with a homodimer protein (Homology/Alternative) . A chain and a B chain are present. Two ligands bind to the protein at the same time. Should I use both chains (complete...

17 September 2021 5,661 2 View

Molecular dynamics simulation in gromacs

First, docking was performed after deletion a protein subunit. Gromacs (latest version and forcefield used )used for the simulation. we have experimental validation of active site and the...

01 January 1970 4,730 1 View

Protein-protein molecular dynamic simulation in gromacs

I am seeking a pdf or doc file . #Molecular_Dynamic_Simulation #Gromacs #Protein-Protein MDS Hey, I am working on a project where MD simulation is needed for protein-protein interaction in a...

01 January 1970 8,978 6 View