Marwa Abd El Kader Zaater

2 Questions 2 Answers 0 Followers

Questions related from Marwa Abd El Kader Zaater

How to rejoin a separated 2 chain protein after gromacs production run?

I want to know how to fix the separation of 2 chains after the production run. I'm trying different combinations of trajconv after creating an index file having a specific residue(s) on the...

02 February 2020 8,972 1 View

How to prepare a PDB structure for MD simulation run using Gromacs through the Galaxy project?

Now I have a problem, my PDB structure contains 4 chains. I want to remove 2 of them and the co- crystallized ligand, how can I do this if I'm following nearly the same steps as this tutorial ?...

01 January 2020 8,503 3 View