Mareike Daubert

3 Questions 3 Answers 0 Followers

Questions related from Mareike Daubert

How do I choose a suitable connection network for sPCA?

I am currently running a sPCA on GBS data from a number of plant populations following the tutorial provided by Thibaut Jombart. I understand one important decision to make during the analysis is...

05 April 2024 7,938 0 View

What is the best way to calculate a neighbour net on large NGS datasets?

Hello, I want to construct a neighbour net on a dataset generated from GBS. (De novo assembly in ipyrad, 130 samples). Depending on how I filter, the dataset is quite large. When I filter more...

25 June 2021 6,356 5 View

Calculating genetic distances from genlight objects

I am trying to calculate genetic distances between individuals of a large genotyping-by-sequencing dataset. So far, I have read in the data, by reading in the vcf file and converting it to a...

01 January 1970 6,664 0 View