Manish Ramchandani

4 Questions 4 Answers 0 Followers

Questions related from Manish Ramchandani

Decrease in Ramachandran resdiues in most favored region after MD simulation of homology modelled protein?

I performed a homology modeling using modeller after which on evaluation the ramchandran plot showd residues in favored region 91%. After this I performed MD simulation of protein for 10ns for...

18 February 2023 8,337 2 View

Rmsf graph of P-L in gromacs showing graphic like this?

Rmsf of P-L complex is showing this graph. What is the problem and how to resolve?

13 December 2022 9,915 2 View

Related to Google colab gromacs?

1) whenever I run md in google colab ( free) ,I have to always run the md installation command again and again.And in between as session is interrupted the gromacs automatically gets deleted , so...

09 September 2022 6,522 4 View

Protein-Ligand MD run in gromacs with OPLS force field

There is no particular procedure available for running MD of P-L complex in OPLS force field as the provided server ToPolbuild, TopolGen are not available and ligpargen show's error in input...

01 January 1970 839 4 View