Maninder Singh

2 Questions 10 Answers 0 Followers

Questions related from Maninder Singh

How to remove mirror effect in membrane simulation?

Dear all, I performed 200ns MD simulations (gromacs 5.0.7) of peptide and lipid bilayer. Placed 6 copies of the peptide(12 aminoacids long) over the surface of the lipid bilayer(128 lipids, 64...

10 October 2018 4,140 1 View

How to calculate hydrogen bond occupancy in peptide-membrane simulation using gromacs hbond tool?

Dear all, I performed MD simulations (gromacs 5.0.7) of peptide and mixed lipid bilayer (POPS:POPC). Initially placed 6 copies of the peptide parallely over the surface of the lipid bilayer...

10 October 2018 517 5 View