Mandar Kulkarni

4 Questions 14 Answers 0 Followers

Questions related from Mandar Kulkarni

RNA secondary structure BPSEQ to dot-bracket conversion?

Hello Everyone, Is there any program to convert BPSEQ RNA secondary notation to dot-bracket notation, apart from the RNAPDBee server? I am looking for a program that can be run locally so as to...

25 November 2021 723 0 View

What is the open channel conductance of BMIM-Cl?

Please, can anyone provide me the literature for the value of open channel conductance ( Not conductivity) of 1 M BMIM-Cl in graphene nanopores having a diameter less than 10 nm? Thanks in advance.

05 February 2016 7,412 1 View

What is the possible reason for an irregular variation in autocorrelation function?

Hello Everyone, The variable is fluctuating between state A and state B during an equilibrium simulation of 20 ns. I have collected 1,00,000 variable points during this simulation. I have plotted...

31 October 2015 2,471 6 View

Which is more accurate approach to calculate ionic current in DNA translocation simulations using GROMACS ?

I am studying translocation of dsDNA poly(AT)45 via graphene nanopore at 0.1080 V/nm electric field in 1 M KCL solution. The production run is performed in NVT ensemble using Nose-Hoover...

01 June 2015 2,751 4 View