Makarim Osman

6 Questions 19 Answers 0 Followers

Questions related from Makarim Osman

How to draw a protein secondary structure topology from protein sequence?

Dear all, Can anyone provide me with a software or a webtool for drawing 2D-topology for a protein from a sequence similar to the one provided in the following figure?

17 November 2023 8,344 2 View

How to set molecular dynamics parameters for equilibration and production files for simulation in NAMD file from 1 ns to 100 ns?

I am performing molecular dynamics simulation using NAMD for a protein-protein complex. The configuration files were generated by Charmm GUI. Step4_equilibration.inp (at the end of the...

19 March 2023 5,607 6 View

Where can I find data about Triticum asetivum V2 centromere exact position?

Dear all, I'm looking for the exact centromere position for the entire set of chromosomes (7 groups) of the Triticum asetivum V2... I've searched different databases but with no luck..

23 October 2021 1,024 2 View

The use of MEGA-X software to construct phylogenetic trees?

I'm trying construct a phylogenetic tree using the analysis method maximum parsimony (Max-mini-branch and bound) for different protein families (each family contain set of protein sequences with...

05 June 2021 6,158 3 View

How can I access the Plant Genome Duplication Database (PGDD)?

I could not access the page for Plant genome duplication database, and couldn't find any other database and related tools to analyze my sequences for gene duplication...

22 March 2021 8,409 15 View

What is the suitable statistical analysis to test the relationship between two diseases from 5 different regions?

I have only the total number of cases for each diseases (measured by millions) and I'm trying to find a significance relationship for their coexistence throughout the 5 regions...

25 March 2020 4,558 3 View