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Questions related from Magdy S Alabady
Raw RNA-seq data are discrete data but normalized RNA-seq data (RPM or RPKM or FPKM) are not discrete, i.e. continuous data. Shouldn't this change in the data's nature change our understanding of...
05 May 2013 7,749 12 View
Why RNA-seq data are always modeled as negative binomial distribution? What are the parameters or the assumptions that make RNA-seq data fit the negative binomial distribution?
04 April 2013 8,219 3 View
We measured the expression of two genes before and after DSN normalization of the full-length cDNA library. These two genes are Ubi4, which is highly abundant, and Pr1.1, which is not....
02 February 2013 5,797 4 View
Has anyone compared Trinity with Abyss-trans for de novo assembly of the same data sets? I'd like to see the stats of both assemblies as well as any other assessment measures. Which algorithms...
02 February 2013 1,764 12 View
