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Is it possible to establish the CIMP (CpG island methylator phenotype) status of a tumor using data from the EPIC array from Illumina without having the matched normal?
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I was extracting DNA from Paraffin slides, and after adding xylene, a thick viscous liquid formed on top of the solution, so thick I can't pipette. Any ideas of what it could be?
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I've seen in a comment that people are performing flow cytometry in FFPE samples, but I thought the cells should be alive to do it, isn't that right? How does it work?
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