Kriti Khare

6 Questions 2 Answers 0 Followers

Questions related from Kriti Khare

Has anyone analyzed epitope binding to TCR repertoire CDR3 amino acids using RNA-seq data?

I am working with a dataset that includes CDR3 amino acid sequences from TCR-seq, epitopes, HLA-type, gene expression (from RNA-seq), and species information. My goal is to understand how...

20 September 2024 5,292 0 View

Does anyone know how to perform amino acid usage using T cell receptor repertoire data with variable amino acid patterns?

I am working on T cell receptor repertoire analysis obtained from RNA seq data. I am trying to understand the CDR3 length and amino acid usage in my data set, where I have variable lengths of...

13 March 2024 3,044 0 View

What factors might contribute to a rapid reduction in the number of pores in R.10 flow cells after a single use?

The number of pores in the R.10 flow cell decreased significantly from 1500 to 500 after nanopore sequencing with only 24 samples multiplexing. I'm using the SQK-NBD114.24 kit as the standard for...

12 December 2023 7,449 0 View

Does anyone know the length of t cell receptor and CDR3?

I am trying to look at the t cell receptor (TCR) repertoire heterogeneity. So, I wanted to ask if I can target and explore complete V(D)J region and not restricted to just CDR3 region? Also, is it...

03 July 2023 2,999 0 View

Could someone provide me the protocol for respiratory virus oligo panel (RVOP) and Viral Surveillance Panel (VSP) by Illumina?

Any link will also be helpful. Thank you

16 May 2023 173 1 View

Can anyone suggest a way to reduce the number of GO terms without losing the data's importance?

I am having difficulty analyzing GO pathway results due to a large list of redundant or similar GO terms. These terms have been generated from significant differentially expressed genes in...

17 April 2023 4,791 3 View