Kayode Fashae

3 Questions 9 Answers 0 Followers

Questions related from Kayode Fashae

Plasmid sequencing: bacterial whole genome sequencing or direct sequencing??

I have a collection of bacterial isolates from which I want to obtain the plasmid sequences. I have two options: 1. Extract the plasmids and then sequence them 2. Subject the bacteria to whole...

05 May 2018 3,295 5 View

Will appreciate explanation of criteria used in determination of quality of SNPs in bacterial whole genome sequences?

Could somebody offer simple explanation of different parameters use to determine good quality SNPs in bacterial whole genome sequences during reference-based assembly?

01 January 2016 4,556 4 View

How do I construct a phylogenetic SNP tree using whole genome sequences of bacteria?

I have obtained assembled genomes (assembled contigs) of 14 salmonellae to construct a phylogenetic SNP tree but my background in this is little. I will appreciate some sorts of guides through the...

09 September 2015 4,912 15 View