Kalani Jayanetti

4 Questions 15 Answers 0 Followers

Questions related from Kalani Jayanetti

How to find missing residues in a PDB file?

Hi, I'm doing MD simulation study about Glucocorticoid with protein chains. I need to find out missing residues of protein in my PDB file. I already used chimera but didn't find those missing...

09 September 2017 2,202 15 View

How to do a Molecular Dynamics simulation for DNA molecule without constraint it?

how to do a MD simulation for DNA molecule using AMBER force field in GROMACS? And how to make an one itp file for two complementary strands of DNA?

08 August 2017 338 5 View

Molecular Dynamics of DNA using the AMBER force field?

Hi, I'm working on a research about structural changes of DNA. When doing the Molecular Dynamics of DNA molecule using AMBER force field ,two strands get separated. why is it? How can I do a...

08 August 2017 7,629 17 View

Why there are two protein chains in Glucocorticoid receptor - DNA binding domain?

Hi, I'm doing a MD study about DBD of Glucocorticoid receptor. Why do it have two Zn motifs ( protein chains)? Both have same function or different functions? What is the importance of having two...

08 August 2017 9,432 4 View