Kai Wang

3 Questions 7 Answers 0 Followers

Questions related from Kai Wang

Does anyone have suggestions for an SDF file viewer web application?

I'm having an idea of building a public website for sharing of our compound data and modeling results. That involves using a web API ( or JS Plug-in) for structure file view. I think jsDraw2....

21 July 2014 1,959 6 View

How to connect the contigs to scaffolds using the information of pair-end reads by mapping the reads to contigs?

I'm doing De Novo Assembly of Transcriptome using Trinity. But it does not do scaffolding. Would it be worth doing it using some of the software available out there? I'm thinking about using the...

17 October 2012 2,341 3 View

How to evaluate the performance of a transcript assembly?

I'm learning to use Trinity for transcript assembly. How do I evaluate the result? I can only think of N50, number of transcripts, and mapped reads. What else can I calculated?

13 September 2012 9,691 0 View