How do I use gmx convert-tpr for rmsd analysis?

I'm trying to compare the loop6 motion in TIM (PDB: 2jk2, open .xtc file) with the crystal structure of loop 6 in the closed state (PDB: 1hti, em.tpr file) using an rmsd analysis in Gromacs....

13 October 2020 6,748 2 View