Jose Antonio Aragon-Martin

5 Questions 6 Answers 0 Followers

Questions related from Jose Antonio Aragon-Martin

What specifications Workstation Tower/Laptop do you use to run Promethion P2 Solo flow cells? and which database/company to order the computer?

Oxford Nanopore already provide IT Example computers: https://nanoporetech.com/document/requirements/promethion-2s-it-req Precision 7770 Workstation - Discontinued Precision 3660 Workstation -...

08 December 2024 7,588 1 View

Bwa vs bowtie2 vs Novoalign, What are their advantages and disadvantages?

I am trying to analyse NGS data and I heard that these are the hot tools at the moment (bwa, bowtie2 and Novoalign). Are there other tools that can do the same? Am I supposed to be using all of...

12 September 2017 10,015 5 View

IGV vs UGENE vs Gap5, What are their advantages and disadvantages?

I am working with bam files from different NGS platforms and I am trying to use the following computer applications to visualise the reads: IGV (Broad Institute) UGENE (UniPro) Gap5 (staden...

08 September 2017 5,073 2 View

How can I create a gap5 database (Staden Package) with data from SOLiD?

The samples were done in SOLiD. The Staden Package program does not come with a tutorial as the gap4 program for sequence alignment, which would have been very useful. Please step by step would...

22 February 2014 3,998 2 View

Bcftools mpileup or GATK HaplotypeCaller for variant calling?

My brain goes into the spinning death wheel mode when I compare two VCF files because they should have approximately the same megabytes: VCF file1 ~ 70 Mb, data processed with HaplotypeCaller...

01 January 1970 7,133 0 View